J3_6OTR_035
3D structure
- PDB id
- 6OTR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (AAU)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.12 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCGA
- Length
- 25 nucleotides
- Bulged bases
- 6OTR|1|XA|A|975, 6OTR|1|XA|G|976, 6OTR|1|XA|A|978
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6OTR_035 not in the Motif Atlas
- Homologous match to J3_5J7L_006
- Geometric discrepancy: 0.1396
- The information below is about J3_5J7L_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.4
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
6OTR|1|XA|U|955
6OTR|1|XA|U|956
6OTR|1|XA|U|957
6OTR|1|XA|A|958
6OTR|1|XA|A|959
6OTR|1|XA|U|960
6OTR|1|XA|U|961
6OTR|1|XA|C|962
*
6OTR|1|XA|G|973
6OTR|1|XA|A|974
6OTR|1|XA|A|975
6OTR|1|XA|G|976
6OTR|1|XA|A|977
6OTR|1|XA|A|978
6OTR|1|XA|C|979
6OTR|1|XA|C|980
6OTR|1|XA|U|981
6OTR|1|XA|U|982
6OTR|1|XA|A|983
6OTR|1|XA|C|984
*
6OTR|1|XA|G|1221
6OTR|1|XA|G|1222
6OTR|1|XA|C|1223
6OTR|1|XA|G|1224
6OTR|1|XA|A|1225
Current chains
- Chain XA
- 16S rRNA
Nearby chains
- Chain XJ
- 30S ribosomal protein S10
- Chain XM
- 30S ribosomal protein S13
- Chain XN
- 30S ribosomal protein S14 type Z
- Chain XS
- 30S ribosomal protein S19
- Chain XY
- Addiction module toxin, Txe/YoeB family
- Chain XZ
- Addiction module toxin, Txe/YoeB family
Coloring options: