J3_6OTR_057

3D structure

PDB id

6OTR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

GCCUAAG*UAGGAAUCU*AGC

Length

19 nucleotides

Bulged bases

6OTR|1|QA|C|48, 6OTR|1|QA|A|50, 6OTR|1|QA|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OTR_057 not in the Motif Atlas

Homologous match to J3_4LFB_014

Geometric discrepancy: 0.0609

The information below is about J3_4LFB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_63856.1

Basepair signature

cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6OTR|1|QA|G|46
6OTR|1|QA|C|47
6OTR|1|QA|C|48
6OTR|1|QA|U|49
6OTR|1|QA|A|50
6OTR|1|QA|A|51
6OTR|1|QA|G|52
*
6OTR|1|QA|U|359
6OTR|1|QA|A|360
6OTR|1|QA|G|361
6OTR|1|QA|G|362
6OTR|1|QA|A|363
6OTR|1|QA|A|364
6OTR|1|QA|U|365
6OTR|1|QA|C|366
6OTR|1|QA|U|367
*
6OTR|1|QA|A|393
6OTR|1|QA|G|394
6OTR|1|QA|C|395

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QL

30S ribosomal protein S12

Chain QP

30S ribosomal protein S16

Chain YI

50S ribosomal protein L9