J3_6OTR_063
3D structure
- PDB id
- 6OTR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (AAU)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.12 Å
Loop
- Sequence
- CUCG*CGAUAGCGCACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 6OTR|1|RA|C|34, 6OTR|1|RA|U|448, 6OTR|1|RA|C|456
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6OTR_063 not in the Motif Atlas
- Homologous match to J3_9DFE_003
- Geometric discrepancy: 0.0889
- The information below is about J3_9DFE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 10
Unit IDs
6OTR|1|RA|C|32
6OTR|1|RA|U|33
6OTR|1|RA|C|34
6OTR|1|RA|G|35
*
6OTR|1|RA|C|445
6OTR|1|RA|G|446
6OTR|1|RA|A|447
6OTR|1|RA|U|448
6OTR|1|RA|A|449
6OTR|1|RA|G|450
6OTR|1|RA|C|451
6OTR|1|RA|G|452
6OTR|1|RA|C|453
6OTR|1|RA|A|454
6OTR|1|RA|C|455
6OTR|1|RA|C|456
6OTR|1|RA|A|457
6OTR|1|RA|G|458
6OTR|1|RA|U|459
6OTR|1|RA|A|460
6OTR|1|RA|C|461
*
6OTR|1|RA|G|468
6OTR|1|RA|G|469
6OTR|1|RA|A|470
6OTR|1|RA|A|471
6OTR|1|RA|A|472
6OTR|1|RA|G|473
Current chains
- Chain RA
- 23S rRNA
Nearby chains
- Chain R7
- 50S ribosomal protein L34
- Chain RF
- 50S ribosomal protein L4
- Chain RU
- 50S ribosomal protein L20
- Chain RX
- 50S ribosomal protein L23
Coloring options: