J3_6OTR_075
3D structure
- PDB id
- 6OTR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (AAU)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.12 Å
Loop
- Sequence
- CGAAG*CGCCAGAGAG*CGUAG
- Length
- 20 nucleotides
- Bulged bases
- 6OTR|1|YA|G|321
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6OTR_075 not in the Motif Atlas
- Homologous match to J3_9DFE_006
- Geometric discrepancy: 0.0779
- The information below is about J3_9DFE_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_77124.1
- Basepair signature
- cWW-tSH-cHH-cSW-F-tHS-cWW-cWW-F-F-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
6OTR|1|YA|C|297
6OTR|1|YA|G|298
6OTR|1|YA|A|299
6OTR|1|YA|A|300
6OTR|1|YA|G|301
*
6OTR|1|YA|C|316
6OTR|1|YA|G|317
6OTR|1|YA|C|318
6OTR|1|YA|C|319
6OTR|1|YA|A|320
6OTR|1|YA|G|321
6OTR|1|YA|A|322
6OTR|1|YA|G|323
6OTR|1|YA|A|324
6OTR|1|YA|G|325
*
6OTR|1|YA|C|337
6OTR|1|YA|G|338
6OTR|1|YA|U|339
6OTR|1|YA|A|340
6OTR|1|YA|G|341
Current chains
- Chain YA
- 23S rRNA
Nearby chains
- Chain YF
- 50S ribosomal protein L4
- Chain YY
- 50S ribosomal protein L24
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