3D structure

PDB id
6OUO (explore in PDB, NAKB, or RNA 3D Hub)
Description
RF2 accommodated state bound 70S complex at long incubation time
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
UUUAAUUC*GAAGAACCUUAC*GGCUA
Length
25 nucleotides
Bulged bases
6OUO|1|2|A|975, 6OUO|1|2|G|976, 6OUO|1|2|A|978
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6OUO_018 not in the Motif Atlas
Homologous match to J3_5J7L_006
Geometric discrepancy: 0.1158
The information below is about J3_5J7L_006
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_83516.4
Basepair signature
cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

6OUO|1|2|U|955
6OUO|1|2|U|956
6OUO|1|2|U|957
6OUO|1|2|A|958
6OUO|1|2|A|959
6OUO|1|2|U|960
6OUO|1|2|U|961
6OUO|1|2|C|962
*
6OUO|1|2|G|973
6OUO|1|2|A|974
6OUO|1|2|A|975
6OUO|1|2|G|976
6OUO|1|2|A|977
6OUO|1|2|A|978
6OUO|1|2|C|979
6OUO|1|2|C|980
6OUO|1|2|U|981
6OUO|1|2|U|982
6OUO|1|2|A|983
6OUO|1|2|C|984
*
6OUO|1|2|G|1221
6OUO|1|2|G|1222
6OUO|1|2|C|1223
6OUO|1|2|U|1224
6OUO|1|2|A|1225

Current chains

Chain 2
16S ribosomal RNA

Nearby chains

Chain A
Peptide chain release factor 2
Chain o
30S ribosomal protein S10
Chain r
30S ribosomal protein S13
Chain s
30S ribosomal protein S14
Chain x
30S ribosomal protein S19

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1826 s