J3_6OUO_030

3D structure

PDB id

6OUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

RF2 accommodated state bound 70S complex at long incubation time

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UCGACCC*GGAAA*UA

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OUO_030 not in the Motif Atlas

Homologous match to J3_9DFE_012

Geometric discrepancy: 0.574

The information below is about J3_9DFE_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_31965.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

6

Unit IDs

6OUO|1|1|U|1344
6OUO|1|1|C|1345
6OUO|1|1|G|1346
6OUO|1|1|A|1347
6OUO|1|1|C|1348
6OUO|1|1|C|1349
6OUO|1|1|C|1350
*
6OUO|1|1|G|1381
6OUO|1|1|G|1382
6OUO|1|1|A|1383
6OUO|1|1|A|1384
6OUO|1|1|A|1385
*
6OUO|1|1|U|1402
6OUO|1|1|A|1403

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain T

50S ribosomal protein L23