J3_6OUO_032

3D structure

PDB id

6OUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

RF2 accommodated state bound 70S complex at long incubation time

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

6OUO|1|1|A|2198

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OUO_032 not in the Motif Atlas

Homologous match to J3_5J7L_044

Geometric discrepancy: 0.1177

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn 3-way junction

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

6OUO|1|1|C|2091
6OUO|1|1|U|2092
6OUO|1|1|G|2093
*
6OUO|1|1|C|2196
6OUO|1|1|U|2197
6OUO|1|1|A|2198
6OUO|1|1|A|2199
6OUO|1|1|C|2200
*
6OUO|1|1|G|2223
6OUO|1|1|G|2224
6OUO|1|1|A|2225
6OUO|1|1|C|2226
6OUO|1|1|A|2227
6OUO|1|1|G|2228

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L2

Chain G

50S ribosomal protein L9

Chain X

50S ribosomal protein L28