3D structure

PDB id
6OXA (explore in PDB, NAKB, or RNA 3D Hub)
Description
Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU)
Experimental method
X-RAY DIFFRACTION
Resolution
3.25 Å

Loop

Sequence
CAAG*CUAGUAA*UGAAUACG
Length
19 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6OXA_005 not in the Motif Atlas
Homologous match to J3_4LFB_002
Geometric discrepancy: 0.1271
The information below is about J3_4LFB_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_25303.4
Basepair signature
cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW
Number of instances in this motif group
4

Unit IDs

6OXA|1|QA|C|936
6OXA|1|QA|A|937
6OXA|1|QA|A|938
6OXA|1|QA|G|939
*
6OXA|1|QA|C|1344
6OXA|1|QA|U|1345
6OXA|1|QA|A|1346
6OXA|1|QA|G|1347
6OXA|1|QA|U|1348
6OXA|1|QA|A|1349
6OXA|1|QA|A|1350
*
6OXA|1|QA|U|1372
6OXA|1|QA|G|1373
6OXA|1|QA|A|1374
6OXA|1|QA|A|1375
6OXA|1|QA|U|1376
6OXA|1|QA|A|1377
6OXA|1|QA|C|1378
6OXA|1|QA|G|1379

Current chains

Chain QA
16S rRNA

Nearby chains

Chain QG
30S ribosomal protein S7
Chain QI
30S ribosomal protein S9
Chain QW
Transfer RNA; tRNA

Coloring options:


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