J3_6OXA_033

3D structure

PDB id

6OXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OXA_033 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.1192

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

6OXA|1|XA|C|936
6OXA|1|XA|A|937
6OXA|1|XA|A|938
6OXA|1|XA|G|939
*
6OXA|1|XA|C|1344
6OXA|1|XA|U|1345
6OXA|1|XA|A|1346
6OXA|1|XA|G|1347
6OXA|1|XA|U|1348
6OXA|1|XA|A|1349
6OXA|1|XA|A|1350
*
6OXA|1|XA|U|1372
6OXA|1|XA|G|1373
6OXA|1|XA|A|1374
6OXA|1|XA|A|1375
6OXA|1|XA|U|1376
6OXA|1|XA|A|1377
6OXA|1|XA|C|1378
6OXA|1|XA|G|1379

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XG

30S ribosomal protein S7

Chain XI

30S ribosomal protein S9

Chain XW

Transfer RNA; tRNA