3D structure

PDB id
6OXA (explore in PDB, NAKB, or RNA 3D Hub)
Description
Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU)
Experimental method
X-RAY DIFFRACTION
Resolution
3.25 Å

Loop

Sequence
CAAUG*CCCAGUUC*GCCG
Length
17 nucleotides
Bulged bases
6OXA|1|XA|U|1240, 6OXA|1|XA|U|1302
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6OXA_041 not in the Motif Atlas
Homologous match to J3_4LFB_009
Geometric discrepancy: 0.1203
The information below is about J3_4LFB_009
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_37047.6
Basepair signature
cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F
Number of instances in this motif group
4

Unit IDs

6OXA|1|XA|C|1237
6OXA|1|XA|A|1238
6OXA|1|XA|A|1239
6OXA|1|XA|U|1240
6OXA|1|XA|G|1241
*
6OXA|1|XA|C|1296
6OXA|1|XA|C|1297
6OXA|1|XA|C|1298
6OXA|1|XA|A|1299
6OXA|1|XA|G|1300
6OXA|1|XA|U|1301
6OXA|1|XA|U|1302
6OXA|1|XA|C|1303
*
6OXA|1|XA|G|1334
6OXA|1|XA|C|1335
6OXA|1|XA|C|1336
6OXA|1|XA|G|1337

Current chains

Chain XA
16S rRNA

Nearby chains

Chain XG
30S ribosomal protein S7
Chain XM
30S ribosomal protein S13
Chain XU
30S ribosomal protein Thx

Coloring options:


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