J3_6OXA_054
3D structure
- PDB id
- 6OXA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.25 Å
Loop
- Sequence
- CAC*GGUAAG*CGAGG
- Length
- 14 nucleotides
- Bulged bases
- 6OXA|1|YA|A|2790
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6OXA_054 not in the Motif Atlas
- Homologous match to J3_7RQB_013
- Geometric discrepancy: 0.2706
- The information below is about J3_7RQB_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_24416.1
- Basepair signature
- cWW-F-F-tWH-cWW-F-tHS-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
6OXA|1|YA|C|2789
6OXA|1|YA|A|2790
6OXA|1|YA|C|2791
*
6OXA|1|YA|G|2805
6OXA|1|YA|G|2807
6OXA|1|YA|U|2808
6OXA|1|YA|A|2809
6OXA|1|YA|A|2810
6OXA|1|YA|G|2811
*
6OXA|1|YA|C|2889
6OXA|1|YA|G|2891
6OXA|1|YA|A|2892
6OXA|1|YA|G|2893
6OXA|1|YA|G|2894
Current chains
- Chain YA
- 23S rRNA
Nearby chains
- Chain YE
- 50S ribosomal protein L3
- Chain YW
- 50S ribosomal protein L22
Coloring options: