J3_6OXA_066

3D structure

PDB id

6OXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GCCUAAG*UAGGAAUCU*AGC

Length

19 nucleotides

Bulged bases

6OXA|1|XA|C|48, 6OXA|1|XA|A|50, 6OXA|1|XA|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OXA_066 not in the Motif Atlas

Homologous match to J3_4LFB_014

Geometric discrepancy: 0.0781

The information below is about J3_4LFB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6OXA|1|XA|G|46
6OXA|1|XA|C|47
6OXA|1|XA|C|48
6OXA|1|XA|U|49
6OXA|1|XA|A|50
6OXA|1|XA|A|51
6OXA|1|XA|G|52
*
6OXA|1|XA|U|359
6OXA|1|XA|A|360
6OXA|1|XA|G|361
6OXA|1|XA|G|362
6OXA|1|XA|A|363
6OXA|1|XA|A|364
6OXA|1|XA|U|365
6OXA|1|XA|C|366
6OXA|1|XA|U|367
*
6OXA|1|XA|A|393
6OXA|1|XA|G|394
6OXA|1|XA|C|395

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XL

30S ribosomal protein S12

Chain XP

30S ribosomal protein S16