J3_6OXI_030
3D structure
- PDB id
- 6OXI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (UAA)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.49 Å
Loop
- Sequence
- UG*CGCCGAUGG*CAG
- Length
- 14 nucleotides
- Bulged bases
- 6OXI|1|XA|U|723
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6OXI_030 not in the Motif Atlas
- Homologous match to J3_5J7L_003
- Geometric discrepancy: 0.1017
- The information below is about J3_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_11934.4
- Basepair signature
- cWW-cWW-tWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
6OXI|1|XA|U|672
6OXI|1|XA|G|673
*
6OXI|1|XA|C|717
6OXI|1|XA|G|718
6OXI|1|XA|C|719
6OXI|1|XA|C|720
6OXI|1|XA|G|721
6OXI|1|XA|A|722
6OXI|1|XA|U|723
6OXI|1|XA|G|724
6OXI|1|XA|G|725
*
6OXI|1|XA|C|732
6OXI|1|XA|A|733
6OXI|1|XA|G|734
Current chains
- Chain XA
- 16S rRNA
Nearby chains
- Chain XF
- 30S ribosomal protein S6
- Chain XK
- 30S ribosomal protein S11
- Chain XO
- 30S ribosomal protein S15
- Chain XR
- 30S ribosomal protein S18
- Chain XX
- mRNA
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