J3_6P4G_002

3D structure

PDB id

6P4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian small ribosomal subunit in complex with the Israeli Acute Paralysis Virus IRES (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AG*CGCAAAU*AGU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6P4G_002 not in the Motif Atlas

Geometric match to J3_4V88_078

Geometric discrepancy: 0.0768

The information below is about J3_4V88_078

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.1

Basepair signature

cWW-F-cWW-F-F-cSW-F-cWW

Number of instances in this motif group

5

Unit IDs

6P4G|1|2|A|40
6P4G|1|2|G|41
*
6P4G|1|2|C|481
6P4G|1|2|G|482
6P4G|1|2|C|483
6P4G|1|2|A|484
6P4G|1|2|A|485
6P4G|1|2|A|486
6P4G|1|2|U|487
*
6P4G|1|2|A|512
6P4G|1|2|G|513
6P4G|1|2|U|514

Current chains

Chain 2

18S rRNA

Nearby chains

Chain K

uS4

Chain Y

uS12