J3_6P4G_012

3D structure

PDB id

6P4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian small ribosomal subunit in complex with the Israeli Acute Paralysis Virus IRES (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UG*UGUC*GAUAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6P4G_012 not in the Motif Atlas

Homologous match to J3_8C3A_085

Geometric discrepancy: 0.0733

The information below is about J3_8C3A_085

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.2

Basepair signature

cWW-F-F-F-F-tSS-cWW-cWW

Number of instances in this motif group

3

Unit IDs

6P4G|1|2|U|1350
6P4G|1|2|G|1351
*
6P4G|1|2|U|1360
6P4G|1|2|G|1361
6P4G|1|2|U|1362
6P4G|1|2|C|1363
*
6P4G|1|2|G|1375
6P4G|1|2|A|1376
6P4G|1|2|U|1377
6P4G|1|2|A|1378
6P4G|1|2|A|1379

Current chains

Chain 2

18S rRNA

Nearby chains

Chain B

uS2

Chain D

uS5

Chain S

eS17