J3_6P4H_014

3D structure

PDB id

6P4H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian small ribosomal subunit in complex with the Israeli Acute Paralysis Virus IRES (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CACUG*CGUGAUGG*CGAG

Length

17 nucleotides

Bulged bases

6P4H|1|2|U|1535, 6P4H|1|2|G|1603

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6P4H_014 not in the Motif Atlas

Homologous match to J3_4V88_041

Geometric discrepancy: 0.1565

The information below is about J3_4V88_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.3

Basepair signature

cWW-cSS-cSH-F-tWH-F-cWW-cSH-F-F-F-cWW

Number of instances in this motif group

5

Unit IDs

6P4H|1|2|C|1532
6P4H|1|2|A|1533
6P4H|1|2|C|1534
6P4H|1|2|U|1535
6P4H|1|2|G|1536
*
6P4H|1|2|C|1597
6P4H|1|2|G|1598
6P4H|1|2|U|1599
6P4H|1|2|G|1600
6P4H|1|2|A|1601
6P4H|1|2|U|1602
6P4H|1|2|G|1603
6P4H|1|2|G|1604
*
6P4H|1|2|C|1635
6P4H|1|2|G|1636
6P4H|1|2|A|1637
6P4H|1|2|G|1638

Current chains

Chain 2

18S rRNA

Nearby chains

Chain G

uS7

Chain T

uS13

Chain U

eS19

Chain a

eS25