J3_6P4H_016

3D structure

PDB id

6P4H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian small ribosomal subunit in complex with the Israeli Acute Paralysis Virus IRES (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AGAUUAAG*CGCGCAAAU*AGU

Length

20 nucleotides

Bulged bases

6P4H|1|2|A|45, 6P4H|1|2|A|46

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6P4H_016 not in the Motif Atlas

Homologous match to J3_8P9A_069

Geometric discrepancy: 0.0695

The information below is about J3_8P9A_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6P4H|1|2|A|40
6P4H|1|2|G|41
6P4H|1|2|A|42
6P4H|1|2|U|43
6P4H|1|2|U|44
6P4H|1|2|A|45
6P4H|1|2|A|46
6P4H|1|2|G|47
*
6P4H|1|2|C|479
6P4H|1|2|G|480
6P4H|1|2|C|481
6P4H|1|2|G|482
6P4H|1|2|C|483
6P4H|1|2|A|484
6P4H|1|2|A|485
6P4H|1|2|A|486
6P4H|1|2|U|487
*
6P4H|1|2|A|512
6P4H|1|2|G|513
6P4H|1|2|U|514

Current chains

Chain 2

18S rRNA

Nearby chains

Chain K

uS4

Chain Y

uS12