J3_6P5I_009
3D structure
- PDB id
- 6P5I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UCUUAG*CGAGAC*GCAAUA
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6P5I_009 not in the Motif Atlas
- Homologous match to J3_4V88_039
- Geometric discrepancy: 0.1069
- The information below is about J3_4V88_039
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_47248.1
- Basepair signature
- cWW-F-F-F-F-F-tHH-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
6P5I|1|2|U|1340
6P5I|1|2|C|1341
6P5I|1|2|U|1342
6P5I|1|2|U|1343
6P5I|1|2|A|1344
6P5I|1|2|G|1345
*
6P5I|1|2|C|1384
6P5I|1|2|G|1385
6P5I|1|2|A|1386
6P5I|1|2|G|1387
6P5I|1|2|A|1388
6P5I|1|2|C|1389
*
6P5I|1|2|G|1481
6P5I|1|2|C|1482
6P5I|1|2|A|1483
6P5I|1|2|A|1484
6P5I|1|2|U|1485
6P5I|1|2|A|1486
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain D
- uS5
- Chain E
- uS3
- Chain R
- uS9
- Chain S
- eS17
- Chain V
- uS10
- Chain e
- eS29
Coloring options: