J3_6P5I_041

3D structure

PDB id

6P5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGAAG*CC*GAAAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6P5I_041 not in the Motif Atlas

Homologous match to J3_8C3A_055

Geometric discrepancy: 0.1658

The information below is about J3_8C3A_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10980.1

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6P5I|1|5|A|2598
6P5I|1|5|G|2599
6P5I|1|5|A|2600
6P5I|1|5|A|2601
6P5I|1|5|G|2602
*
6P5I|1|5|C|2737
6P5I|1|5|C|2738
*
6P5I|1|5|G|2742
6P5I|1|5|A|2743
6P5I|1|5|A|2744
6P5I|1|5|A|2745
6P5I|1|5|A|2746
6P5I|1|5|U|2747

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AA

uL2

Chain Ag

eL34

Chain Ap

eL43