J3_6P5J_004

3D structure

PDB id

6P5J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAUUC*GGACCAGAG*CAUUUG

Length

20 nucleotides

Bulged bases

6P5J|1|2|G|991

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6P5J|1|2|C|937
6P5J|1|2|A|938
6P5J|1|2|U|939
6P5J|1|2|U|940
6P5J|1|2|C|941
*
6P5J|1|2|G|985
6P5J|1|2|G|986
6P5J|1|2|A|987
6P5J|1|2|C|988
6P5J|1|2|C|989
6P5J|1|2|A|990
6P5J|1|2|G|991
6P5J|1|2|A|992
6P5J|1|2|G|993
*
6P5J|1|2|C|1000
6P5J|1|2|A|1001
6P5J|1|2|U|1002
6P5J|1|2|U|1003
6P5J|1|2|U|1004
6P5J|1|2|G|1005

Current chains

Chain 2

18S rRNA

Nearby chains

Chain Ap

eL43

Chain C

eS1

Chain O

uS15

Chain P

uS11

Chain b

eS26