J3_6P5J_022

3D structure

PDB id

6P5J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGAUG*CAGU*AGGGUGUAAAU

Length

20 nucleotides

Bulged bases

6P5J|1|5|U|2763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6P5J|1|5|A|2551
6P5J|1|5|G|2552
6P5J|1|5|A|2553
6P5J|1|5|U|2554
6P5J|1|5|G|2555
*
6P5J|1|5|C|2572
6P5J|1|5|A|2573
6P5J|1|5|G|2574
6P5J|1|5|U|2575
*
6P5J|1|5|A|2757
6P5J|1|5|G|2758
6P5J|1|5|G|2759
6P5J|1|5|G|2760
6P5J|1|5|U|2761
6P5J|1|5|G|2762
6P5J|1|5|U|2763
6P5J|1|5|A|2764
6P5J|1|5|A|2765
6P5J|1|5|A|2766
6P5J|1|5|U|2767

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AZ

eL27