J3_6P5J_036

3D structure

PDB id

6P5J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUCGGUCC*GGGAGU*AAU

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6P5J|1|5|G|2439
6P5J|1|5|U|2440
6P5J|1|5|C|2441
6P5J|1|5|G|2442
6P5J|1|5|G|2443
6P5J|1|5|U|2444
6P5J|1|5|C|2445
6P5J|1|5|C|2446
*
6P5J|1|5|G|2514
6P5J|1|5|G|2515
6P5J|1|5|G|2516
6P5J|1|5|A|2517
6P5J|1|5|G|2518
6P5J|1|5|U|2519
*
6P5J|1|5|A|2536
6P5J|1|5|A|2537
6P5J|1|5|U|2538

Current chains

Chain 5

28S rRNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain AX

eL23

Chain Ag

eL34

Chain Ak

eL38

Chain Al

eL39