J3_6P5J_037
3D structure
- PDB id
- 6P5J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AGAUGG*CGUUCCGAAGGGACGGG*CCCUCAGCCGAU
- Length
- 35 nucleotides
- Bulged bases
- 6P5J|1|5|C|2470, 6P5J|1|5|A|2472, 6P5J|1|5|G|2475
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6P5J|1|5|A|2451
6P5J|1|5|G|2452
6P5J|1|5|A|2453
6P5J|1|5|U|2454
6P5J|1|5|G|2455
6P5J|1|5|G|2456
*
6P5J|1|5|C|2465
6P5J|1|5|G|2466
6P5J|1|5|U|2467
6P5J|1|5|U|2468
6P5J|1|5|C|2469
6P5J|1|5|C|2470
6P5J|1|5|G|2471
6P5J|1|5|A|2472
6P5J|1|5|A|2473
6P5J|1|5|G|2474
6P5J|1|5|G|2475
6P5J|1|5|G|2476
6P5J|1|5|A|2477
6P5J|1|5|C|2478
6P5J|1|5|G|2479
6P5J|1|5|G|2480
6P5J|1|5|G|2481
*
6P5J|1|5|C|2497
6P5J|1|5|C|2498
6P5J|1|5|C|2499
6P5J|1|5|U|2500
6P5J|1|5|C|2501
6P5J|1|5|A|2502
6P5J|1|5|G|2503
6P5J|1|5|C|2504
6P5J|1|5|C|2505
6P5J|1|5|G|2506
6P5J|1|5|A|2507
6P5J|1|5|U|2508
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain AA
- uL2
- Chain AG
- eL8
- Chain AN
- eL15
- Chain AX
- eL23
- Chain Aj
- eL37
Coloring options: