J3_6P5J_039

3D structure

PDB id

6P5J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGGUUG*CCUUC*GCACCGCACGUUCGUG

Length

27 nucleotides

Bulged bases

6P5J|1|5|U|4882, 6P5J|1|5|A|4938, 6P5J|1|5|C|4940, 6P5J|1|5|A|4943, 6P5J|1|5|C|4944, 6P5J|1|5|U|4950

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6P5J|1|5|C|4749
6P5J|1|5|G|4750
6P5J|1|5|G|4751
6P5J|1|5|U|4752
6P5J|1|5|U|4753
6P5J|1|5|G|4754
*
6P5J|1|5|C|4879
6P5J|1|5|C|4880
6P5J|1|5|U|4881
6P5J|1|5|U|4882
6P5J|1|5|C|4883
*
6P5J|1|5|G|4936
6P5J|1|5|C|4937
6P5J|1|5|A|4938
6P5J|1|5|C|4939
6P5J|1|5|C|4940
6P5J|1|5|G|4941
6P5J|1|5|C|4942
6P5J|1|5|A|4943
6P5J|1|5|C|4944
6P5J|1|5|G|4945
6P5J|1|5|U|4946
6P5J|1|5|U|4947
6P5J|1|5|C|4948
6P5J|1|5|G|4949
6P5J|1|5|U|4950
6P5J|1|5|G|4951

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AE

eL6

Chain AM

L14e

Chain AO

uL13

Chain Af

eL33