J3_6P5K_001
3D structure
- PDB id
- 6P5K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CAG*CAG*CG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6P5K|1|1|C|6553
6P5K|1|1|A|6554
6P5K|1|1|G|6555
*
6P5K|1|1|C|6575
6P5K|1|1|A|6576
6P5K|1|1|G|6577
*
6P5K|1|1|C|6598
6P5K|1|1|G|6599
Current chains
- Chain 1
- IAPV-IRES
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: