J3_6P5K_005

3D structure

PDB id

6P5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AUUC*GGACCAGAG*CAUUU

Length

18 nucleotides

Bulged bases

6P5K|1|2|G|991

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6P5K_005 not in the Motif Atlas

Homologous match to J3_4V88_033

Geometric discrepancy: 0.121

The information below is about J3_4V88_033

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_38616.1

Basepair signature

cWW-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW

Number of instances in this motif group

1

Unit IDs

6P5K|1|2|A|938
6P5K|1|2|U|939
6P5K|1|2|U|940
6P5K|1|2|C|941
*
6P5K|1|2|G|985
6P5K|1|2|G|986
6P5K|1|2|A|987
6P5K|1|2|C|988
6P5K|1|2|C|989
6P5K|1|2|A|990
6P5K|1|2|G|991
6P5K|1|2|A|992
6P5K|1|2|G|993
*
6P5K|1|2|C|1000
6P5K|1|2|A|1001
6P5K|1|2|U|1002
6P5K|1|2|U|1003
6P5K|1|2|U|1004

Current chains

Chain 2

18S rRNA

Nearby chains

Chain Ap

eL43

Chain C

eS1

Chain O

uS15

Chain P

uS11

Chain b

eS26