J3_6P5K_025
3D structure
- PDB id
- 6P5K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GGGG*CGCUUCUGGCGCCAAG*CGAC
- Length
- 24 nucleotides
- Bulged bases
- 6P5K|1|5|C|4116, 6P5K|1|5|U|4117, 6P5K|1|5|U|4118, 6P5K|1|5|C|4119, 6P5K|1|5|U|4120, 6P5K|1|5|G|4121
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6P5K_025 not in the Motif Atlas
- Geometric match to J3_8C3A_009
- Geometric discrepancy: 0.2394
- The information below is about J3_8C3A_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_02167.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-tHH-tHS-cWW
- Number of instances in this motif group
- 1
Unit IDs
6P5K|1|5|G|4091
6P5K|1|5|G|4092
6P5K|1|5|G|4093
6P5K|1|5|G|4094
*
6P5K|1|5|C|4114
6P5K|1|5|G|4115
6P5K|1|5|C|4116
6P5K|1|5|U|4117
6P5K|1|5|U|4118
6P5K|1|5|C|4119
6P5K|1|5|U|4120
6P5K|1|5|G|4121
6P5K|1|5|G|4122
6P5K|1|5|C|4123
6P5K|1|5|G|4124
6P5K|1|5|C|4125
6P5K|1|5|C|4126
6P5K|1|5|A|4127
6P5K|1|5|A|4128
6P5K|1|5|G|4129
*
6P5K|1|5|C|4155
6P5K|1|5|G|4156
6P5K|1|5|A|4157
6P5K|1|5|C|4158
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain AA
- uL2
- Chain AG
- eL8
- Chain AX
- eL23
- Chain AZ
- eL27
- Chain Ac
- eL30
- Chain Ag
- eL34
- Chain Ap
- eL43
- Chain C
- eS1
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