J3_6P5K_029

3D structure

PDB id

6P5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAU*GCUUCU*AAGG

Length

13 nucleotides

Bulged bases

6P5K|1|5|U|4989

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6P5K|1|5|C|4970
6P5K|1|5|A|4971
6P5K|1|5|U|4972
*
6P5K|1|5|G|4986
6P5K|1|5|C|4987
6P5K|1|5|U|4988
6P5K|1|5|U|4989
6P5K|1|5|C|4990
6P5K|1|5|U|4991
*
6P5K|1|5|A|5060
6P5K|1|5|A|5061
6P5K|1|5|G|5062
6P5K|1|5|G|5063

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AB

uL3

Chain AP

uL22

Chain Ad

eL31