J3_6P5K_036

3D structure

PDB id

6P5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCCCGGAC*GGGUG*UUAGAUGUC

Length

22 nucleotides

Bulged bases

6P5K|1|2|G|1274, 6P5K|1|2|G|1507, 6P5K|1|2|U|1509

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6P5K|1|2|G|1270
6P5K|1|2|C|1271
6P5K|1|2|C|1272
6P5K|1|2|C|1273
6P5K|1|2|G|1274
6P5K|1|2|G|1275
6P5K|1|2|A|1276
6P5K|1|2|C|1277
*
6P5K|1|2|G|1320
6P5K|1|2|G|1321
6P5K|1|2|G|1322
6P5K|1|2|U|1323
6P5K|1|2|G|1324
*
6P5K|1|2|U|1504
6P5K|1|2|U|1505
6P5K|1|2|A|1506
6P5K|1|2|G|1507
6P5K|1|2|A|1508
6P5K|1|2|U|1509
6P5K|1|2|G|1510
6P5K|1|2|U|1511
6P5K|1|2|C|1512

Current chains

Chain 2

18S rRNA

Nearby chains

Chain L

eS10

Chain Q

uS19

Chain e

eS29

Chain g

eS31