J3_6P5K_037

3D structure

PDB id

6P5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGGC*GGACAAGU*ACCCGAGAUUG

Length

24 nucleotides

Bulged bases

6P5K|1|2|U|1477

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6P5K|1|2|C|1391
6P5K|1|2|U|1392
6P5K|1|2|G|1393
6P5K|1|2|G|1394
6P5K|1|2|C|1395
*
6P5K|1|2|G|1450
6P5K|1|2|G|1451
6P5K|1|2|A|1452
6P5K|1|2|C|1453
6P5K|1|2|A|1454
6P5K|1|2|A|1455
6P5K|1|2|G|1456
6P5K|1|2|U|1457
*
6P5K|1|2|A|1469
6P5K|1|2|C|1470
6P5K|1|2|C|1471
6P5K|1|2|C|1472
6P5K|1|2|G|1473
6P5K|1|2|A|1474
6P5K|1|2|G|1475
6P5K|1|2|A|1476
6P5K|1|2|U|1477
6P5K|1|2|U|1478
6P5K|1|2|G|1479

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

uS3

Chain G

uS7

Chain R

uS9

Chain S

eS17

Chain V

uS10

Chain d

eS28

Chain e

eS29

Chain h

RACK1