J3_6P5K_038

3D structure

PDB id

6P5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAAG*CCCAGCCCGUGGAC*GGUAG

Length

23 nucleotides

Bulged bases

6P5K|1|5|C|216, 6P5K|1|5|C|217, 6P5K|1|5|A|218, 6P5K|1|5|G|219, 6P5K|1|5|U|224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6P5K|1|5|C|196
6P5K|1|5|A|197
6P5K|1|5|A|198
6P5K|1|5|G|199
*
6P5K|1|5|C|215
6P5K|1|5|C|216
6P5K|1|5|C|217
6P5K|1|5|A|218
6P5K|1|5|G|219
6P5K|1|5|C|220
6P5K|1|5|C|221
6P5K|1|5|C|222
6P5K|1|5|G|223
6P5K|1|5|U|224
6P5K|1|5|G|225
6P5K|1|5|G|226
6P5K|1|5|A|227
6P5K|1|5|C|228
*
6P5K|1|5|G|240
6P5K|1|5|G|241
6P5K|1|5|U|242
6P5K|1|5|A|243
6P5K|1|5|G|244

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AC

uL4

Chain AY

uL24