J3_6P5K_041

3D structure

PDB id

6P5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAGUC*GUGCG*CGAUG

Length

15 nucleotides

Bulged bases

6P5K|1|5|C|704

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6P5K|1|5|C|451
6P5K|1|5|A|452
6P5K|1|5|G|453
6P5K|1|5|U|454
6P5K|1|5|C|455
*
6P5K|1|5|G|701
6P5K|1|5|U|702
6P5K|1|5|G|703
6P5K|1|5|C|704
6P5K|1|5|G|705
*
6P5K|1|5|C|1292
6P5K|1|5|G|1293
6P5K|1|5|A|1294
6P5K|1|5|U|1295
6P5K|1|5|G|1296

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AE

eL6

Chain Ae

eL32

Chain Af

eL33

Chain Ar

eL28