J3_6P5K_048
3D structure
- PDB id
- 6P5K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UGG*UAAGA*UA
- Length
- 10 nucleotides
- Bulged bases
- 6P5K|1|2|G|921
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6P5K_048 not in the Motif Atlas
- Geometric match to J3_8P9A_071
- Geometric discrepancy: 0.1595
- The information below is about J3_8P9A_071
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_56052.5
- Basepair signature
- cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
6P5K|1|2|U|682
6P5K|1|2|G|683
6P5K|1|2|G|684
*
6P5K|1|2|U|918
6P5K|1|2|A|919
6P5K|1|2|A|920
6P5K|1|2|G|921
6P5K|1|2|A|922
*
6P5K|1|2|U|1022
6P5K|1|2|A|1023
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain I
- eS7
- Chain M
- uS17
- Chain O
- uS15
- Chain X
- uS8
- Chain Y
- uS12
- Chain c
- eS27
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