3D structure

PDB id
6P5N (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
UG*UGUC*GAUAA
Length
11 nucleotides
Bulged bases
6P5N|1|2|A|1378
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6P5N_012 not in the Motif Atlas
Homologous match to J3_8C3A_085
Geometric discrepancy: 0.1196
The information below is about J3_8C3A_085
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_76043.2
Basepair signature
cWW-F-F-F-F-tSS-cWW-cWW
Number of instances in this motif group
3

Unit IDs

6P5N|1|2|U|1350
6P5N|1|2|G|1351
*
6P5N|1|2|U|1360
6P5N|1|2|G|1361
6P5N|1|2|U|1362
6P5N|1|2|C|1363
*
6P5N|1|2|G|1375
6P5N|1|2|A|1376
6P5N|1|2|U|1377
6P5N|1|2|A|1378
6P5N|1|2|A|1379

Current chains

Chain 2
18S rRNA

Nearby chains

Chain B
uS2
Chain D
uS5
Chain S
eS17

Coloring options:


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