J3_6P5N_014

3D structure

PDB id

6P5N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CACUG*CGUGAUGG*CGAG

Length

17 nucleotides

Bulged bases

6P5N|1|2|U|1535, 6P5N|1|2|G|1603

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6P5N_014 not in the Motif Atlas

Homologous match to J3_4V88_041

Geometric discrepancy: 0.179

The information below is about J3_4V88_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.3

Basepair signature

cWW-cSS-cSH-F-tWH-F-cWW-cSH-F-F-F-cWW

Number of instances in this motif group

5

Unit IDs

6P5N|1|2|C|1532
6P5N|1|2|A|1533
6P5N|1|2|C|1534
6P5N|1|2|U|1535
6P5N|1|2|G|1536
*
6P5N|1|2|C|1597
6P5N|1|2|G|1598
6P5N|1|2|U|1599
6P5N|1|2|G|1600
6P5N|1|2|A|1601
6P5N|1|2|U|1602
6P5N|1|2|G|1603
6P5N|1|2|G|1604
*
6P5N|1|2|C|1635
6P5N|1|2|G|1636
6P5N|1|2|A|1637
6P5N|1|2|G|1638

Current chains

Chain 2

18S rRNA

Nearby chains

Chain G

uS7

Chain T

uS13

Chain U

eS19

Chain a

eS25