J3_6P5N_031

3D structure

PDB id

6P5N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AGAUUAAG*CGCGCAAAU*AGU

Length

20 nucleotides

Bulged bases

6P5N|1|2|A|46

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6P5N_031 not in the Motif Atlas

Homologous match to J3_8P9A_069

Geometric discrepancy: 0.0793

The information below is about J3_8P9A_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6P5N|1|2|A|40
6P5N|1|2|G|41
6P5N|1|2|A|42
6P5N|1|2|U|43
6P5N|1|2|U|44
6P5N|1|2|A|45
6P5N|1|2|A|46
6P5N|1|2|G|47
*
6P5N|1|2|C|479
6P5N|1|2|G|480
6P5N|1|2|C|481
6P5N|1|2|G|482
6P5N|1|2|C|483
6P5N|1|2|A|484
6P5N|1|2|A|485
6P5N|1|2|A|486
6P5N|1|2|U|487
*
6P5N|1|2|A|512
6P5N|1|2|G|513
6P5N|1|2|U|514

Current chains

Chain 2

18S rRNA

Nearby chains

Chain K

uS4

Chain Y

uS12