J3_6PC5_016

3D structure

PDB id

6PC5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compounds 46 and VS1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CCUG*CGAUAGUGAACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

6PC5|1|I|U|34, 6PC5|1|I|U|448, 6PC5|1|I|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6PC5_016 not in the Motif Atlas

Homologous match to J3_5J7L_067

Geometric discrepancy: 0.0682

The information below is about J3_5J7L_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

6PC5|1|I|C|32
6PC5|1|I|C|33
6PC5|1|I|U|34
6PC5|1|I|G|35
*
6PC5|1|I|C|445
6PC5|1|I|G|446
6PC5|1|I|A|447
6PC5|1|I|U|448
6PC5|1|I|A|449
6PC5|1|I|G|450
6PC5|1|I|U|451
6PC5|1|I|G|452
6PC5|1|I|A|453
6PC5|1|I|A|454
6PC5|1|I|C|455
6PC5|1|I|C|456
6PC5|1|I|A|457
6PC5|1|I|G|458
6PC5|1|I|U|459
6PC5|1|I|A|460
6PC5|1|I|C|461
*
6PC5|1|I|G|468
6PC5|1|I|G|469
6PC5|1|I|A|470
6PC5|1|I|A|471
6PC5|1|I|A|472
6PC5|1|I|G|473

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L4