J3_6PC6_001

3D structure

PDB id

6PC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 47

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GC*GCGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6PC6_001 not in the Motif Atlas

Homologous match to J3_5J7L_036

Geometric discrepancy: 0.0893

The information below is about J3_5J7L_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_60031.2

Basepair signature

cWW-cWW-cWW-tWH-tSH-F-F

Number of instances in this motif group

7

Unit IDs

6PC6|1|I|G|30
6PC6|1|I|C|31
*
6PC6|1|I|G|474
6PC6|1|I|C|475
6PC6|1|I|G|476
6PC6|1|I|A|477
6PC6|1|I|A|478
6PC6|1|I|A|479
6PC6|1|I|A|480
6PC6|1|I|G|481
*
6PC6|1|I|C|509
6PC6|1|I|C|510

Current chains

Chain I

23S ribosomal RNA

Nearby chains