J3_6PC6_008

3D structure

PDB id

6PC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 47

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6PC6_008 not in the Motif Atlas

Homologous match to J3_5J7L_044

Geometric discrepancy: 0.0617

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn in J3

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

6PC6|1|I|C|2091
6PC6|1|I|U|2092
6PC6|1|I|G|2093
*
6PC6|1|I|C|2196
6PC6|1|I|U|2197
6PC6|1|I|A|2198
6PC6|1|I|A|2199
6PC6|1|I|C|2200
*
6PC6|1|I|G|2223
6PC6|1|I|G|2224
6PC6|1|I|A|2225
6PC6|1|I|C|2226
6PC6|1|I|A|2227
6PC6|1|I|G|2228

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L2