J3_6PC6_015

3D structure

PDB id

6PC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 47

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CCUG*CGAUAGUGAACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

6PC6|1|I|U|34, 6PC6|1|I|U|448, 6PC6|1|I|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6PC6_015 not in the Motif Atlas

Homologous match to J3_5J7L_067

Geometric discrepancy: 0.074

The information below is about J3_5J7L_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

6PC6|1|I|C|32
6PC6|1|I|C|33
6PC6|1|I|U|34
6PC6|1|I|G|35
*
6PC6|1|I|C|445
6PC6|1|I|G|446
6PC6|1|I|A|447
6PC6|1|I|U|448
6PC6|1|I|A|449
6PC6|1|I|G|450
6PC6|1|I|U|451
6PC6|1|I|G|452
6PC6|1|I|A|453
6PC6|1|I|A|454
6PC6|1|I|C|455
6PC6|1|I|C|456
6PC6|1|I|A|457
6PC6|1|I|G|458
6PC6|1|I|U|459
6PC6|1|I|A|460
6PC6|1|I|C|461
*
6PC6|1|I|G|468
6PC6|1|I|G|469
6PC6|1|I|A|470
6PC6|1|I|A|471
6PC6|1|I|A|472
6PC6|1|I|G|473

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L4