J3_6PC7_015

3D structure

PDB id

6PC7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 46

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CCUG*CGAUAGUGAACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

6PC7|1|I|U|34, 6PC7|1|I|U|448, 6PC7|1|I|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6PC7_015 not in the Motif Atlas

Homologous match to J3_5J7L_067

Geometric discrepancy: 0.0628

The information below is about J3_5J7L_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

6PC7|1|I|C|32
6PC7|1|I|C|33
6PC7|1|I|U|34
6PC7|1|I|G|35
*
6PC7|1|I|C|445
6PC7|1|I|G|446
6PC7|1|I|A|447
6PC7|1|I|U|448
6PC7|1|I|A|449
6PC7|1|I|G|450
6PC7|1|I|U|451
6PC7|1|I|G|452
6PC7|1|I|A|453
6PC7|1|I|A|454
6PC7|1|I|C|455
6PC7|1|I|C|456
6PC7|1|I|A|457
6PC7|1|I|G|458
6PC7|1|I|U|459
6PC7|1|I|A|460
6PC7|1|I|C|461
*
6PC7|1|I|G|468
6PC7|1|I|G|469
6PC7|1|I|A|470
6PC7|1|I|A|471
6PC7|1|I|A|472
6PC7|1|I|G|473

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L4