J3_6PC8_001

3D structure

PDB id

6PC8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40q

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GC*GCGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6PC8_001 not in the Motif Atlas

Homologous match to J3_7RQB_001

Geometric discrepancy: 0.0926

The information below is about J3_7RQB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_65070.3

Basepair signature

cWW-tWH-cWW-tSH-F-cWW-F

Number of instances in this motif group

4

Unit IDs

6PC8|1|I|G|30
6PC8|1|I|C|31
*
6PC8|1|I|G|474
6PC8|1|I|C|475
6PC8|1|I|G|476
6PC8|1|I|A|477
6PC8|1|I|A|478
6PC8|1|I|A|479
6PC8|1|I|A|480
6PC8|1|I|G|481
*
6PC8|1|I|C|509
6PC8|1|I|C|510

Current chains

Chain I

23S ribosomal RNA

Nearby chains