3D structure

PDB id
6PC8 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 50S ribosome bound to compound 40q
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
GC*GCGAAAAG*CC
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6PC8_001 not in the Motif Atlas
Homologous match to J3_7RQB_001
Geometric discrepancy: 0.0926
The information below is about J3_7RQB_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_65070.3
Basepair signature
cWW-tWH-cWW-tSH-F-cWW-F
Number of instances in this motif group
4

Unit IDs

6PC8|1|I|G|30
6PC8|1|I|C|31
*
6PC8|1|I|G|474
6PC8|1|I|C|475
6PC8|1|I|G|476
6PC8|1|I|A|477
6PC8|1|I|A|478
6PC8|1|I|A|479
6PC8|1|I|A|480
6PC8|1|I|G|481
*
6PC8|1|I|C|509
6PC8|1|I|C|510

Current chains

Chain I
23S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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