J3_6PC8_008

3D structure

PDB id

6PC8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40q

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6PC8_008 not in the Motif Atlas

Homologous match to J3_5J7L_044

Geometric discrepancy: 0.0753

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn in J3

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

6PC8|1|I|C|2091
6PC8|1|I|U|2092
6PC8|1|I|G|2093
*
6PC8|1|I|C|2196
6PC8|1|I|U|2197
6PC8|1|I|A|2198
6PC8|1|I|A|2199
6PC8|1|I|C|2200
*
6PC8|1|I|G|2223
6PC8|1|I|G|2224
6PC8|1|I|A|2225
6PC8|1|I|C|2226
6PC8|1|I|A|2227
6PC8|1|I|G|2228

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L2