J3_6PC8_014

3D structure

PDB id

6PC8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40q

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GC*GCGAAAAGAAC*GAGUGAAAAAGAACC

Length

28 nucleotides

Bulged bases

6PC8|1|I|A|504, 6PC8|1|I|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6PC8_014 not in the Motif Atlas

Homologous match to J3_4WF9_011

Geometric discrepancy: 0.1256

The information below is about J3_4WF9_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6PC8|1|I|G|30
6PC8|1|I|C|31
*
6PC8|1|I|G|474
6PC8|1|I|C|475
6PC8|1|I|G|476
6PC8|1|I|A|477
6PC8|1|I|A|478
6PC8|1|I|A|479
6PC8|1|I|A|480
6PC8|1|I|G|481
6PC8|1|I|A|482
6PC8|1|I|A|483
6PC8|1|I|C|484
*
6PC8|1|I|G|496
6PC8|1|I|A|497
6PC8|1|I|G|498
6PC8|1|I|U|499
6PC8|1|I|G|500
6PC8|1|I|A|501
6PC8|1|I|A|502
6PC8|1|I|A|503
6PC8|1|I|A|504
6PC8|1|I|A|505
6PC8|1|I|G|506
6PC8|1|I|A|507
6PC8|1|I|A|508
6PC8|1|I|C|509
6PC8|1|I|C|510

Current chains

Chain I

23S ribosomal RNA

Nearby chains