J3_6PC8_015

3D structure

PDB id

6PC8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40q

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCUG*CGAUAGUGAACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

6PC8|1|I|U|34, 6PC8|1|I|U|448, 6PC8|1|I|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6PC8_015 not in the Motif Atlas

Homologous match to J3_5J7L_067

Geometric discrepancy: 0.0835

The information below is about J3_5J7L_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

6PC8|1|I|C|32
6PC8|1|I|C|33
6PC8|1|I|U|34
6PC8|1|I|G|35
*
6PC8|1|I|C|445
6PC8|1|I|G|446
6PC8|1|I|A|447
6PC8|1|I|U|448
6PC8|1|I|A|449
6PC8|1|I|G|450
6PC8|1|I|U|451
6PC8|1|I|G|452
6PC8|1|I|A|453
6PC8|1|I|A|454
6PC8|1|I|C|455
6PC8|1|I|C|456
6PC8|1|I|A|457
6PC8|1|I|G|458
6PC8|1|I|U|459
6PC8|1|I|A|460
6PC8|1|I|C|461
*
6PC8|1|I|G|468
6PC8|1|I|G|469
6PC8|1|I|A|470
6PC8|1|I|A|471
6PC8|1|I|A|472
6PC8|1|I|G|473

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L4