J3_6PCH_016

3D structure

PDB id

6PCH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 21

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCUG*CGAUAGUGAACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

6PCH|1|I|U|34, 6PCH|1|I|U|448, 6PCH|1|I|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6PCH_016 not in the Motif Atlas

Homologous match to J3_5J7L_067

Geometric discrepancy: 0.0863

The information below is about J3_5J7L_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

6PCH|1|I|C|32
6PCH|1|I|C|33
6PCH|1|I|U|34
6PCH|1|I|G|35
*
6PCH|1|I|C|445
6PCH|1|I|G|446
6PCH|1|I|A|447
6PCH|1|I|U|448
6PCH|1|I|A|449
6PCH|1|I|G|450
6PCH|1|I|U|451
6PCH|1|I|G|452
6PCH|1|I|A|453
6PCH|1|I|A|454
6PCH|1|I|C|455
6PCH|1|I|C|456
6PCH|1|I|A|457
6PCH|1|I|G|458
6PCH|1|I|U|459
6PCH|1|I|A|460
6PCH|1|I|C|461
*
6PCH|1|I|G|468
6PCH|1|I|G|469
6PCH|1|I|A|470
6PCH|1|I|A|471
6PCH|1|I|A|472
6PCH|1|I|G|473

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L4