J3_6PCQ_008

3D structure

PDB id

6PCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to VM2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6PCQ_008 not in the Motif Atlas

Homologous match to J3_5J7L_044

Geometric discrepancy: 0.0862

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn 3-way junction

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

6PCQ|1|I|C|2091
6PCQ|1|I|U|2092
6PCQ|1|I|G|2093
*
6PCQ|1|I|C|2196
6PCQ|1|I|U|2197
6PCQ|1|I|A|2198
6PCQ|1|I|A|2199
6PCQ|1|I|C|2200
*
6PCQ|1|I|G|2223
6PCQ|1|I|G|2224
6PCQ|1|I|A|2225
6PCQ|1|I|C|2226
6PCQ|1|I|A|2227
6PCQ|1|I|G|2228

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L2