J3_6PCQ_012

3D structure

PDB id

6PCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to VM2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GAAC*GUUGAU*AAUGAAC

Length

17 nucleotides

Bulged bases

6PCQ|1|I|U|2833, 6PCQ|1|I|A|2835

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6PCQ_012 not in the Motif Atlas

Homologous match to J3_5J7L_048

Geometric discrepancy: 0.1546

The information below is about J3_5J7L_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64069.1

Basepair signature

cWW-tHS-F-F-F-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

6PCQ|1|I|G|2812
6PCQ|1|I|A|2813
6PCQ|1|I|A|2814
6PCQ|1|I|C|2815
*
6PCQ|1|I|G|2831
6PCQ|1|I|U|2832
6PCQ|1|I|U|2833
6PCQ|1|I|G|2834
6PCQ|1|I|A|2835
6PCQ|1|I|U|2836
*
6PCQ|1|I|A|2882
6PCQ|1|I|A|2883
6PCQ|1|I|U|2884
6PCQ|1|I|G|2885
6PCQ|1|I|A|2886
6PCQ|1|I|A|2887
6PCQ|1|I|C|2888

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L3