J3_6PCQ_014

3D structure

PDB id

6PCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to VM2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GC*GCGAAAAGAAC*GAGUGAAAAAGAACC

Length

28 nucleotides

Bulged bases

6PCQ|1|I|A|504, 6PCQ|1|I|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6PCQ_014 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.115

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.1

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

6PCQ|1|I|G|30
6PCQ|1|I|C|31
*
6PCQ|1|I|G|474
6PCQ|1|I|C|475
6PCQ|1|I|G|476
6PCQ|1|I|A|477
6PCQ|1|I|A|478
6PCQ|1|I|A|479
6PCQ|1|I|A|480
6PCQ|1|I|G|481
6PCQ|1|I|A|482
6PCQ|1|I|A|483
6PCQ|1|I|C|484
*
6PCQ|1|I|G|496
6PCQ|1|I|A|497
6PCQ|1|I|G|498
6PCQ|1|I|U|499
6PCQ|1|I|G|500
6PCQ|1|I|A|501
6PCQ|1|I|A|502
6PCQ|1|I|A|503
6PCQ|1|I|A|504
6PCQ|1|I|A|505
6PCQ|1|I|G|506
6PCQ|1|I|A|507
6PCQ|1|I|A|508
6PCQ|1|I|C|509
6PCQ|1|I|C|510

Current chains

Chain I

23S ribosomal RNA

Nearby chains