J3_6PCQ_015

3D structure

PDB id

6PCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to VM2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CCUG*CGAUAGUGAACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

6PCQ|1|I|U|34, 6PCQ|1|I|U|448, 6PCQ|1|I|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6PCQ_015 not in the Motif Atlas

Homologous match to J3_5J7L_067

Geometric discrepancy: 0.0761

The information below is about J3_5J7L_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

6PCQ|1|I|C|32
6PCQ|1|I|C|33
6PCQ|1|I|U|34
6PCQ|1|I|G|35
*
6PCQ|1|I|C|445
6PCQ|1|I|G|446
6PCQ|1|I|A|447
6PCQ|1|I|U|448
6PCQ|1|I|A|449
6PCQ|1|I|G|450
6PCQ|1|I|U|451
6PCQ|1|I|G|452
6PCQ|1|I|A|453
6PCQ|1|I|A|454
6PCQ|1|I|C|455
6PCQ|1|I|C|456
6PCQ|1|I|A|457
6PCQ|1|I|G|458
6PCQ|1|I|U|459
6PCQ|1|I|A|460
6PCQ|1|I|C|461
*
6PCQ|1|I|G|468
6PCQ|1|I|G|469
6PCQ|1|I|A|470
6PCQ|1|I|A|471
6PCQ|1|I|A|472
6PCQ|1|I|G|473

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L4